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  1. PGDSpider : An automated data conversion tool for connecting population genetics and genomics programs

    03 Jun 2014 | Manuals | Contributor(s): Heidi Lischer

    The original resource can be found here. PGDSpider is a powerful automated data conversion tool for population genetic and genomics programs. It facilitates the data exchange possibilities between programs for a vast range of data types (e.g. DNA, RNA, NGS, microsatellite, SNP, RFLP, AFLP, …

  2. ISA-Tab specification v1.0

    11 Jul 2013 | Manuals | Contributor(s): Philippe Rocca-Serra, Susanna-Assunta Sansone, Marco Brandizi

    This document describes ISA-TAB, a general purpose framework with which to capture and communicate the complex metadata required to interpret experiments employing combinations of technologies, and the associated data files. Sections 1 to 3 introduce the ISA-TAB proposal, describe the rationale …

  3. Galaxy workflows use

    02 Jul 2013 | Manuals | Contributor(s): Mathieu Bahin

  4. Carthagène - User Documentation

    15 Jul 2013 | Manuals | Contributor(s): Yvan Le Bras

    The CarthaGène software started out in 1995 from the confrontation of 2 computer scientists and one statistician with a multiple population data-set of backcross-like data. From this initial team, only one computer scientist remains. Thanks to C. Gaspin for respectively incorporating the genetic …

  5. Aide-mémoire de statistique appliquée à la biologie

    02 Oct 2013 | Manuals | Contributor(s): Maxime HERVÉ

    The original resource can be found here. Construire son étude et analyser les résultats à l’aide du logiciel R

  6. SAS et la procédure GENMOD pour la régression logistique

    14 Sep 2013 | Manuals | Contributor(s): SAS/STAT(R) 9.2 User's Guide

    The original ressource can be found here.

  7. SILVA databank on BioMAJ manual

    22 Oct 2013 | Manuals | Contributor(s): Mathieu Bahin

  8. ImageJ 2012 revised user guide

    25 Oct 2013 | Manuals | Contributor(s): Tiago Ferreira, Wayne Rasband

    The original resource can be found here. The ImageJ User Guide provides a detailed overview of ImageJ (and inherently Fiji), the standard in scientific image analysis (see XXVI Focus on Bioimage Informatics). It was thought as a comprehensive, fully-searchable, self-contained, annotatable …

  9. ECS pipeline documentation

    25 Oct 2013 | Manuals | Contributor(s): Mathieu Bahin

  10. Stacks : From RAD-seq to genetic maps, population genomics and phylogeography

    13 Nov 2013 | Manuals | Contributor(s): Julian Catchen, Paul A. Hohenlohe, Susan Bassham, Angel Amores, William A. Cresko, John Postlethwait

    The original resource can be found here. Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and …